Data

The data collected by C-MORE researchers have been separated into two tables below:
1 - C-MORE data (data fully funded by C-MORE or integral to its research objectives)
2 - Affiliated data (additional data collected by C-MORE researchers).
Following the tables are further details for some of the datasets.

C-MORE Data

data fully funded by C-MORE or integral to its research objectives

Data Type	Research Group
HPLC pigment	Bidigare Lab (University of Hawaii)
DNA time series samples	Ken Doggett (University of Hawaii) and DeLong Lab (Massachusetts Institute of Technology)
ALOHA sequence data BLAST server (members only)	DeLong Lab (Massachusetts Institute of Technology)
CTD	Laboratory for Microbial Oceanography (University of Hawaii)
Nutrients, CTD, HPLC, phytoplankton species (details below)	Laboratory for Microbial Oceanography (University of Hawaii)
Photosynthesis-irradiance profiles	Church Lab (University of Hawaii)
Bacterial production (3H-leucine incorp.)	Church lab (University of Hawaii)
Sediment trap microbial assemblages	Kemp Lab (University of Hawaii)
Probe arrays and real-time PCR: ESP and MOOS	Environmental Sample Processor (Monterey Bay Aquarium Research Institute)
1-D simulations (physical and ecological) for HOT site	Scott Doney's Group (Woods Hole Oceanographic Institution)
3-D simulations for subtropical N. Pacific region	Scott Doney's Group (Woods Hole Oceanographic Institution)
Satellite data products for HOT region	Scott Doney's Group (Woods Hole Oceanographic Institution) with Ricardo Letelier and David Glover
16S rRNA gene and ITS clone sequences	The Rappé Laboratory (University of Hawaii)
16S rRNA gene terminal restriction fragment length polymorphism	The Rappé Laboratory (University of Hawaii)
16S rRNA gene and ITS quantitative PCR	The Rappé Laboratory (University of Hawaii)
Chlorophyll	Ocean Microbial Ecology Laboratory (Oregon State University)
Particulate C/N	Ocean Microbial Ecology Laboratory (Oregon State University)
15N₂ fixation	Ocean Microbial Ecology Laboratory (Oregon State University)
Particulate Phosphorus	Ocean Microbial Ecology Laboratory (Oregon State University)
HYPERPRO (details below)	Ocean Microbial Ecology Laboratory (Oregon State University)
LISST (details below)	Ocean Microbial Ecology Laboratory (Oregon State University)
Frequency of viral infection (OPEREX)	The Marine Viral Ecology Laboratory (University of Hawaii)
Viral production (OPEREX)	The Marine Viral Ecology Laboratory (University of Hawaii)

Affiliated Data

additional data collected by C-MORE researchers

Data Type	Research Group
Fosmid clones & sequences (members only)	DeLong Lab (Massachusetts Institute of Technology)
Clone and metagenomic sequences: NCBI (ID 29033), NCBI (ID16339), CAMERA	DeLong Lab (Massachusetts Institute of Technology)
Dissolved organic carbon and nitrogen	Repeta Lab (Woods Hole Oceanographic Institution)
Dissolved organic phosphorous	Repeta Lab (Woods Hole Oceanographic Institution)
Dissolved organic carbon composition	Repeta Lab (Woods Hole Oceanographic Institution)
Photosynthetic properties of phytoplankton	Kolber Lab (Monterey Bay Aquarium Research Institute)
Gene expression	Dyhrman Lab (Woods Hole Oceanographic Institution)
Numerical model results (details below)	The Darwin Project (Massachusetts Institute of Technology)
GB's of model results (details below)	The Darwin Project (Massachusetts Institute of Technology)
Model code (details below)	The Darwin Project (Massachusetts Institute of Technology)
1-D model simulated physics (details below)	The Ecosystems Center (Marine Biological Laboratory)
Assimilated biological stocks and rates (details below)	The Ecosystems Center (Marine Biological Laboratory)
QPCR nifH abundances	Church Lab (University of Hawaii)
Gross primary production; net community production; community respiration	Church Lab (University of Hawaii)
DNA qPCR and q RT-PC, and FCM counts (details below)	Zehr Lab (University of California at Santa Cruz)
BULA metagenomic libraries (details below)	Zehr Lab (University of California at Santa Cruz)
CTD, transmissometer, ISUS : ESP and MOOS	Environmental Sample Processor (Monterey Bay Aquarium Research Institute)
Whole genome sequence data	The Rappé Laboratory (University of Hawaii)
BULA cruise metaproteomic libraries	Mak Saito's Laboratory (Woods Hole Oceanographic Institution)
acs/ac9 (details below)	Ocean Microbial Ecology Laboratory (Oregon State University)
15N₂ fixation with P amendments	Ocean Microbial Ecology Laboratory (Oregon State University)
Prochlorococcus Portal	Chisholm Lab (Massachusetts Institute of Technology)
Viral polymerase (DNA pol, RdRP) sequence diversity	The Marine Viral Ecology Laboratory (University of Hawaii)
RNA virus shotgun library	The Marine Viral Ecology Laboratory (University of Hawaii)
Bacteriophage (OM43 phage) genomic sequences	The Marine Viral Ecology Laboratory (University of Hawaii)

Dataset Details

Laboratory for Microbial Oceanography (University of Hawaii)

The LMO frequently collects the following data. Not all data are available for all cruises. HPLC data are from Bidigare Lab (University of Hawaii).

Potential Temperature
Potential Density
CTD Pressure
CTD Temperature
CTD Salinity
CTD Oxygen
CTD Chlorophyll a
Bottle Oxygen
Dissolved Inorganic Carbon
Alkalinity
Phosphate
Nitrate + Nitrite
Silicate
Dissolved Organic Phosphorus
Dissolved Organic Nitrogen
Dissolved Organic Carbon
Total Dissolved Phosphorus
Total Dissolved Nitrogen

Low-Level Nitrogen
Low-Level Phosphorus
Particulate Carbon
Particulate Nitrogen
Particulate Phosphorus
Particulate Silica
Fluorometric Chlorophyll a
Pheopigments
Heterotrophic Bacteria
Prochlorococcus
Synechococcus
Eukaryotes
ATP
Methane
Nitrous Oxide

HPLC Chlorophyllide a
HPLC Chlorophyll c1+c2+c3
HPLC Peridinin
HPLC 19’ Butanoyloxyfucoxanthin
HPLC Fucoxanthin
HPLC 19’ Hexanoyloxyfucoxanthin
HPLC Prasinoxanthin
HPLC Violaxanthin
HPLC Diadinoxanthin
HPLC Alloxanthin
HPLC Lutein
HPLC Zeaxanthin
HPLC Chlorophyll b
HPLC Alpha Carotene
HPLC Beta Carotene
HPLC Divinyl Chlorophyll a
HPLC Monovinyl Chlorophyll a
HPLC Chlorophyll a

The Ecosystems Center (Marine Biological Laboratory)

Assimilated biological stocks and rates Heterotrophic bacterial net production Heterotrophic bacterial C/N/P biomass Heterotrophic bacterial labile DOC/DON/DOP assimilation rate Heterotrophic bacterial semi-labile DOC/DON/DOP assimilation rate Heterotrophic bacterial ammonium/phosphate regeneration rate	Trichodesmium C/N/P biomass Trichodesmium N2-fixation rate Trichodesmium primary production Unicellular diazotroph C/N/P biomass Unicellular diazotroph N2-fixation rate Unicellular diazotroph primary production
1-D model simulated physics mixed layer depth eddy variability

Zehr Lab, Ocean Sciences (University of California at Santa Cruz)

DNA qPCR and q RT-PCR
nifH – groups A and B, Trichodesmium, Rhizoselina spp. Associated Richelia, Hemiaulus spp. Associated Richelia, Chaetoceros spp. Associated Calothrix
narB – Synechococcus spp. HT groups A and B
FCM counts of Crocosphaera-like and Synechococcus-like cells

BULA metagenomic libraries
7 stations with 5 mm and 0.2 mm size fractions
1 station with > 5mm
454 sequencing of large volume filtrations

The Darwin Project (Massachusetts Institute of Technology)

Numerical model: "Simulations of global phytoplankton biogeography and associated information"

Ocean Microbial Ecology Laboratory (Oregon State University)

HYPERPRO
PAR, Ed, Eu, chl, CDOM, T, S, s, K(z), energy fluxes

LISST
particle size distribution in range of 1 mm - 250 mm

acs/ac9
absorption, attenuation

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